Waiting for PARIS—A Biological Target in Search of a Drug
Abstract
A recent breakthrough paper published in Science Translational Medicine has provided compelling evidence that inhibition of Parkin Interacting Substrate (PARIS) may offer clinical researchers an important new therapeutic approach since it shows considerable promise as an important biological target potentially capable of pharmaceutical intervention to slow long term neurodegeneration in patients with Parkinson’s disease (PD). We present several PD-relevant perspectives on this paper that were not discussed in that otherwise entirely scientific narrative. We also outline the some of the work leading up to it, including the massive drug screen that proved necessary to discover a clinically suitable inhibitor of PARIS (Farnesol), as well as relevant PD research within the wider drug class, issues surrounding its future formulation, and next steps in translating this new knowledge into the clinic to evaluate possible long-term PD patient benefits.
INTRODUCTION
Few would deny the search for a cure for Parkinson’s disease (PD) is a noble aim. Nobel prizes for literature were awarded to Pirandello (1934), Beckett (1969), and Pinter (2005); and the connections to PD here, are numerous. The central themes of Samuel Beckett’s Waiting for Godot and Luigi Pirandello’s Six Characters in Search of an Author both share uncertainty over pursuit of a clear direction, illogical progression, multiple interpretations, and lack of clarity about what is real, and what is not. That all sounds very much like the past 50 years of the search for fundamental new therapeutics for PD, even despite it long remaining that noble aim. Harold Pinter was a close friend of Samuel Beckett. He was also president of the Pirandello society when he mentioned that, whilst rehearsing for the 1953 Paris premier of Godot, one of the actors noticed the hesitant cadence throughout a long monologue that Beckett had written into the voice of his character and, after speaking to a young doctor, Marthe Gautier, at the Pitié-Salpêtrière Hospital in Paris, she suggested Parkinson’s disease. The actor immediately incorporated the disease into his portrayal, prompting Beckett at rehearsals to ask him why he was doing this? On learning the reason, Beckett admitted he hadn’t even realized he had interwoven the disease into the character, but revealingly confided his mother had PD. Marthe, now 95, went on to become one of France’s most celebrated and decorated doctors.
INSIGHTS INTO A CRITICAL BIOCHEMICAL PROCESS
Paris is a synonym of a great city of culture and cuisine, whilst PARIS is an acronym of ‘Parkin Interacting Substrate’. Also known as zinc finger protein 746 (ZNF746), PARIS is a 644 amino acid protein member of the family of KRAB zinc-finger proteins transcriptional repressors [1]. It contains four zinc finger domains—which mediate sequence-specific DNA binding in the promoter region of target genes—and one KRAB domain that governs transcriptional repressor activity. Although PARIS has been reported to have functional roles in cancer cells [2–5], and in myoblast senescence [6], it was originally described as a key enzyme sitting mechanistically, between Parkin (an E3 ubiquitin ligase that mediates mitochondrial quality control [7–9]), and PGC-1α (a transcriptional co-activator, peroxisome proliferator-activated receptor-γ coactivator-1α which is a vital master regulator of mitochondrial size and number [10]). PARIS was first shown by Shin et al. to be centrally involved with the selective degeneration of dopaminergic neurons, and this effect was found to be reversible by either Parkin or PGC-1α co-expression [11]. Siddiqui subsequently showed that mitochondrial quality control was PARIS-dependent in PD models in a manner requiring the lysosomal transcription factor EB (TFEB) [12]. PARIS inhibits both Parkin and PGC-1α when its levels become raised, thereby accelerating dopaminergic cell loss. It has therefore been known for a decade that if a safe PARIS inhibitor could be identified then it would hold great clinical promise for patients with PD.
Very recently, a major breakthrough paper by Jo et al. has expanded our biological understanding of PARIS in the context of PD [13]. This study also involved a major drug screen and importantly reported the flavonoid, Farnesol, as an inhibitor of PARIS activity (Fig. 1); it appears to be a compound suitable for clinical evaluation to determine its disease-modifying potential in PD patients. We present here several PD-relevant perspectives on this paper, the work leading up to it, relevant PD research within the wider drug class, issues surrounding its formulation, and next steps in translating this new knowledge into the clinic to evaluate possible long-term PD patient benefits.
Fig. 1
In situations when Parkin is inactivated, or there is exposure to malformed fibrils of alpha synuclein, the level of PARIS increases, which directly leads to transcriptional suppression of PGC-1α, causing reduced mitochondrial function and thus furthering neurodegeneration. Farnesol however fosters the farnesylation of PARIS, thereby intercepting occupancy of PARIS on the PGC-1α promoter which leads to higher levels of PGC-1α and consequently promotes neuroprotection. IRS, insulin response sequences; Farnesyl-PP, Farnesyl diphosphate.
PARIS EXPRESSION DRIVES PD NEURODEGENERATION
Autosomal recessive genetic mutations in the ubiquitin E3 ligase, Parkin, can lower its activity and these patients typically present with an early-onset, slowly-progressive form of PD [14–16]. Even in idiopathic PD, however, normal levels of Parkin are also found to be aberrantly compromised [15, 17–18]. This is potentially important for all PD patients because, when Parkin levels decline for any reason, there is a resulting PARIS-dependent reduction of mitochondrial mass and respiration which leads to dopaminergic cell death [19] thereby accelerating the trajectory of their PD neurodegeneration. Consistent with this notion are the observations that, in a mouse model of age-related sporadic PD, oxidative reductions in Parkin solubility and activity are PARIS and PGC-1α dependent [20]. PARIS also plays an important role in pathologic α-synuclein-induced degeneration because knockout of PARIS markedly attenuates the neurodegeneration set in motion by pathologic α-synuclein [21]. Mutations in glucocerebrosidase, which are highly associated with the development of PD, leads to the accumulation of PARIS [22]. Moreover, PGC-1α was shown to be a key-nodal point in the pathogenesis of PD as genes controlling cellular bioenergetics are reduced in PD patients [23]. The mitochondrial deficits caused when Parkin levels are low are triggered by defects in mitochondrial biogenesis that are propelled by the upregulation of PARIS which directly causes a downregulation of PGC-1α expression and thereby accelerates the loss of dopamine neurons [24, 25]. Further insight into this shows that when PARIS expression is knocked down in cellular models, this results in mitochondrial biogenesis, maintenance of mitochondrial membrane potential, improved respiration, and recovery of morphology and restoration of PGC-1α expression. It is also interesting to note a recent report identifying genetic variants in the PARIS/ZNF746 gene that are significantly associated with early onset PD [26]. PARIS levels are also elevated in PD and thus measuring its levels could serve as a biomarker for the disease [27]. All of these observations conjoin to establish PARIS as a negative regulator of mitochondrial function [28] and authenticate that the Parkin-PARIS-PGC-1α pathway occupies an important role in the progressive loss of dopaminergic neurons in PD.
FINDING A CLINICALLY-SUITABLE INHIBITOR OF PARIS
By 2011/2012, it was clear that if an inhibitor of PARIS could be identified, and if it was safe, then this might well offer a radically new therapeutic approach with potential to offer substantial disease-modifying benefits in the long-term management of PD by fundamentally changing the trajectory of neurodegeneration, and unusually, it could be expedited via two different but simultaneous mechanisms, e.g., by increasing levels both of Parkin and PGC-1α. Since PARIS is a transcriptional repressor it is likely to regulate other genes. Overexpression of PARIS in mice leads to early lethality and selective loss of DA neurons [13]. The loss of DA neurons is rescued by overexpression of PGC-1α, while the early lethality is not rescued to a great extent. This indicates that PARIS has other targets. The identification and characterization of the extent of genes regulated by PARIS requires further study. PARIS knockout mice live a normal life span and do not have any substantial phenotype, suggesting that PARIS inhibitors would be well tolerated with minimal side effects [21]. Thus, PARIS activators might be expected to have on target effects, while PARIS inhibitors might have minimal side effects. Cure Parkinson’s (CP), a global PD grant-giving charity, who founded the International PD Linked Clinical Trials initiative (iLCT), stepped forward and funded the major drug screen (>230,000 compounds) which has just successfully identified Farnesol as a PARIS inhibitor with properties suitable for oral dosing in humans [13]. As a group, CP regularly convenes a very large worldwide committee of PD experts who, over the past decade, have met to evaluate hundreds of candidate therapeutic approaches (including Farnesol) for their disease-modifying potential in PD and, so far, have gone on to foster > 20 long-term disease-modifying trials in PD patients [29–31]. The wider backdrop here is that the therapeutic pipeline in the search for an authentic disease-modifying therapeutic has recently been rapidly expanding [32, 33], and while iLCT is centrally involved in many of these promising clinical initiatives, nevertheless we and others have long felt that finding a clinically safe inhibitor of PARIS could well become a major game-changer in PD.
The necessity of conducting a drug screen to find a PARIS inhibitor was a very unusual prerequisite for the iLCT PD drug development process. After all, the iLCT experience was that almost all the considerable number of individual biological targets of relevance to PD that the iLCT expert committee had already evaluated had typically started out with several drug candidates from which to choose to prosecute into clinical trials. However, in this particular case, no PARIS inhibitor had ever been identified. But, unlike Godot, Farnesol DID arrive [13]. However, it has taken an entire decade between the identification of the biological target, the identification of a safe PARIS inhibitor, and the current planning of the dose-finding and proof-of-concept clinical trials aimed to take this research to the next level. The drug screen had identified 7 candidates, but only 2 of these were practical to consider for clinical testing, with Farnesol representing the most appropriate to take forward into trials.
By the construct of the screening method, Farnesol was found to be highly effective in elevating PGC-1α levels even when PARIS levels were abnormally high and therefore compromising the intrinsic PGC-1α levels [13]. The potency of Farnesol in doing this was due to its ability to farnesylate PARIS via a post-translational protein modification which attaches a small farnesyl group to carboxy-terminal cysteine sulphur on the PARIS protein, and thereby deactivating its physiologically inappropriate property of the transcriptional repression of PGC-1α. Additional in vivo studies in Parkin knockout and preformed alpha synuclein models of PD demonstrated that the protective nature of Farnesol worked extremely well [13]. The authors also interestingly showed the level of farnesylated PARIS was reduced in the substantia nigra of patients with PD, whilst levels were unaltered in the cortex.
PD-RELEVANT PROPERTIES OF FARNESOL
What do we know about Farnesol in relation to PD and other neurological conditions? The current poignant observation that Farnesol generates PARIS farnesylation which, in turn, prevents PARIS occupancy on the PGC-1α promoter (and which thereby beneficially increases the levels of PGC-1α by reversing the PARIS mediated repression of its transcription) seems likely to offer advantageous neuroprotective mitochondrial and cellular consequences that should be tested without delay in long term clinical trials to assess its disease-modifying potential.
A PubMed search for research papers relating to Farnesol and PD retrieves only three [34–36]. All three focus on possible potent monoamine oxidase inhibitory properties of Farnesol in the context of cigarette smoke. That may not be totally irrelevant because, although farnesylation is clearly not involved here, might it be relevant that the monoamine oxidases are anatomically located adjacent to Parkin upon its translocation to the outer mitochondrial membrane of damaged mitochondria to induce mitophagy, and subsequent targeting for lysosomal disposal [37–39]?
Farnesol is classified as one of > 6000 flavonoids derived from plants. It is a terpene alcohol found in corn, tomatoes, lemon grass, chamomile, peaches, and other vegetables and fruits. Its name originated from the acacia tree, Vachellia Farnesiana, which was grown for its perfume by Cardinal Farnese in Rome after its earlier importation from central America. Farnesol has been commercially produced from the flowers of this tree, and widely used in perfumery for > 300 years.
Farnesol has never been clinically tested for any human disease. However, human exposure to Farnesol has been extensive worldwide via ingestion of various foods that contain it, and via inhalation in the context of cigarette smoking. Pre-clinical studies in PD models suggest those exposures are likely to be well below the dose needed to deactivate PARIS to the extent that this might generate tangible clinical benefits. It will therefore be crucial, before major clinical testing in PD patients, to determine what would be a safe and tolerable dose of Farnesol, and what are its pharmacokinetic properties? From this information, a suitable dosing regimen will hopefully be determined and Phase II clinical testing launched.
However, Farnesol is also attracting interest for tackling other neurological conditions and has already been shown to offer striking reductions in the severity of an immune response (autoimmune encephalomyelitis) in an experimental model of multiple sclerosis [40], a finding which could well lead to its clinical development for this condition. It is worth pointing out that those authors tentatively ascribe completely different biological actions of Farnesol to the beneficial response they have reported, including calcium channel inhibition, reduction of oxidative stress, attenuation of the inflammasome response, and lessening of pro-inflammatory cytokine secretion, some of which has previously been supported by others [41–46]. A decade earlier, an exceptionally thorough description of the large number of individual biochemical properties of Farnesol was reported by the NIH from the context of its potential clinical applications in oncology [47]. They particularly focused on how Farnesol also impacted on apoptosis, NF-κB activation, inhibition of proliferation of tumour cells, induction of endoplasmic reticulum stress, induction of mitogen-activated protein kinase (MAPK), activation of peroxisome proliferator-activated receptors (PPARs) amongst several other important intracellular processes. Now knowing that Farnesol, acting via repression of PARIS, is extremely effective in increasing PGC-1α levels, then perhaps at least some of its properties as earlier reported [47] might well now be considered as downstream to the increase in mitochondrial size and number generated via that increased expression of PGC-1α.
Farnesyltransferase inhibitors have recently been shown to enhance α-synuclein clearance by activating SNARE activity [48]. As such, Farnesol might be expected to interfere with SNARE activity via increased farnesyltransferase activity, thereby increasing the levels of α-synuclein. However, Farnesol had the complete opposite effect where it reduced the accumulation of insoluble pathologic α-synuclein while preventing the loss of DA neurons via farnesylation of PARIS in an in vivo pathologic α-synuclein model of PD. These observations suggest that inhibiting PARIS and enhancing PGC-1α function can overcome any deleterious effect on SNARE activity and reduced α-synuclein clearance. One may need to exercise caution with farnesyltransferase inhibitors, since farnesyltransferase levels are decreased in PD substantia nigra [13] and the use of farnesyltransferase inhibitors in PD could further increase the levels of PARIS and exacerbate the neurodegeneration.
WHAT OTHER FLAVINOIDS MAY SHOW SIMILAR PD-RELEVANT PROPERTIES TO FARNESOL?
Other flavonoids that are currently being considered for their potential therapeutic benefit in PD include Kaempferol, Paenia Lactiflora, Curcurmin, Thymoquinone, Genistein, Safflower extract, Quercitin, Ginkgo Biloba, Icaritin, Honokiol, Luteolin, Baicalein, Ferulic Acid (amongst many others), and involve a wide range of proposed biochemical mechanisms [49–62]. A PubMed search on “parkinsons flavinoid” on October 10, 2021 produced 1,867 results, with > 100 publications so far in 2021. These papers report biological actions of relevance to PD, and focus on a number of credible biological targets with theoretical potential to intercept neurodegeneration, notably in terms of reducing mitochondrial oxidative stress, Nrf2 activation, and inhibition of the inflammasome, but these are likely all downstream of the action of Farnesol on PARIS. Whilst Farnesol therefore may well also have some of these properties, it is structurally dissimilar from all those flavonoids mentioned above; in fact, we feel it unlikely that its properties of PARIS farnesylation will be shared by any of the other 6000 + known flavonoids in this wide-ranging biological class.
PURSUING FARNESOL INTO A LONG-TERM NEUROPROTECTIVE TRIAL IN PD PATIENTS
Distilled from the 230,000 compounds in the drug screen as one of the top 7 positive hits for PARIS suppression, Farnesol has a relatively low molecular weight which will assist its transit across the blood brain barrier, and it has been specifically shown [13] to be effective against PARIS when given orally in PD models (including rescuing behavioral deficits). It has good ADME properties for clinical use, except that it is insoluble in water. There is currently very little information about what dose might be selected for use in PD trials and this key information will definitely have to be determined prior to the launch of any Phase II trial to test the disease-modifying potential that Farnesol may eventually offer PD patients. In Jo et al [13], the dose of Farnesol used in the mouse models was extremely high; mice were fed with 5 g/kg Farnesol in chow for 7 days. Although this high dose resulted in a 37%increase in brain concentrations of Farnesol and enhanced PARIS farnesylation in mice, we emphasize that, at this stage, very little is known about its safety, or its efficacy, at ANY dose in humans. We strongly recommend that patients do not source Farnesol in any attempt to use it off-label. We are aware Farnesol is effective when applied topically to treat models of skin conditions, such as burns, but that Farnesol becomes cytotoxic in this context when used in high concentrations so, before testing in PD patients, it will be important to determine the oral dose of Farnesol that can be safely tolerated in humans, as well as to study its pharmacokinetic properties. If it turns out that Farnesol is safe and tolerable at a dose which inhibits PARIS then the Phase II neuroprotective trial will go ahead. Having said that, we also recognize that, since Farnesol has the potential to affect a large number of proteins in many tissues, direct modulation of PARIS itself might eventually turn out to be a better therapeutic approach here. For instance, antisense oligonucleotides or Protac approaches could be directed to selectively reduce PARIS levels. However, future investigations involving extensive pre-clinical and clinical research would be required to test these additional possibilities.
Given that Farnesol is hydrophobic, so cannot be dissolved in water, its safety in patients will need to be determined at whatever the most effective therapeutic dose might eventually turn out to be. Lumbar punctures will be needed to verify blood brain barrier penetrance. Thoughts immediately turn to what formulation might best support the dosing regimen. It might be possible to use a shaken suspension or to dissolve it in oil (although that might prove challenging to drink). It is unlikely to be well absorbed by the gut, but that also needs to be determined.
REFORMULATION OF FARNESOL FOR CLINICAL TESTING IN PD PATIENTS
A nanoformulation might offer improved gut absorption, and reduction of daily dose (and thereby, reduce any potential side effects IF present at the therapeutic dose that has most impact on PARIS inhibition). Lipid-based nanoparticles (such as liposomes and solid lipid nanoparticles) as well as polymer-based nanoparticles (such as micelles) have been developed to overcome the issues of poor solubility, stability, and bioavailability of antioxidant flavonoids, such as Farnesol and curcumin, to promote their utilization as potential disease therapeutics [63–67]. Lipid-based nanoparticles are considered the least toxic for drug delivery purposes since such nanoparticles are usually composed of naturally occurring molecules allowing for biocompatibility and biodegradability [68, 69]. Poly(lactic-co-glycolic acid) (PLGA) liposomes are FDA and EMA approved for use in vaccines and drug delivery and have already been used to formulate Farnesol for the treatment of fungal infections and were tested against the C. albicans microorganism. This initiative reported a nanoparticle size of 140 nm (which would be suitable for brain delivery) [67]. Similar liposome approaches have also been used for many other flavonoids (such as curcumin) and, in such formulations, have been shown to cross the blood-brain barrier readily reaching the cerebral cortex and the hippocampus [65].
Another nanoparticle approach that could be considered is to employ polymeric micelles. These are considered more advantageous for brain delivery due to characteristics such as small particle size (10–200 nm) within the ideal range for brain penetrance, high water-solubility as well as low toxicity [69, 70]. Non-ionic surfactants such as pluronic F68 and labrasol are already used as excipients in numerous approved pharmaceuticals and have been used to formulate the flavonoids myricetin, quercetin, and fisetin into micelles for brain delivery [71]. Pluronics have also been used to formulate Farnesol and have been tested on Streptococcus mutans biofilms [72]. For many current nanocarrier delivery systems, the packing of lipophilic cations into the formulation can also be used to achieve mitochondria-targeted delivery [73–76] which may prove to be a highly appropriate approach for the prospective clinical use of Farnesol to inhibit PARIS to reduce PD neurodegeneration. Any nanoformulation approach, however, would likely require in vivo safety and pharmacokinetic data as well as testing in models of PD to ensure the therapeutic potential of Farnesol is retained before moving forward into clinical trials.
CONCLUDING REMARKS
This is an exciting time for the development of PD therapeutics aimed at slowing disease progression, with several highly promising biochemical targets currently being pursued both in and towards clinical testing. Seen through this encouraging prism, we hope the recent identification of a PARIS inhibitor will eventually make a major long term impact on the lives of PD patients and their families. Propelled by this new discovery [13], by the notion that Farnesol was recently described as a “Noble Unknown” [77] and, given the help Pirandello, Beckett and Pinter provided, we hope these great writers will peruse this article with interest from their own slices of writer’s heaven in their long-term residences in Sicily, Montparnesse and Kensal Green.
CONFLICT OF INTEREST
The co-authors (R.K.W, S.S, L.M. and HM), from Cure Parkinson’s, a worldwide grant-giving medical charity, declare no conflicts of interest. T.M.D. and V.L.D are founders of Valted, LLC and hold an ownership equity interest in the company. These arrangements have been reviewed and approved by the Johns Hopkins University in accordance with its conflict of interest policies. T.M.D and V.L.D. are co-inventors on a patent related to this work, WO2017161155A1 “Methods for preventing or treating Parkinson’s disease by the farnesylation of PARIS.” T.M.D. and V.L.D. are lead investigators on the recent Science Translational Medicine paper [13].
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