Affiliations: [a] Vascular Biology Laboratory, AU-KBC Research Centre, Chennai, Tamil Nadu, India | [b] Department of Biotechnology, Anna University, Chennai, Tamil Nadu, India | [c] SciGenom Labs Pvt. Ltd, CSEZ, Cochin, Kerala, India | [d] Medgenome Labs Pvt. Ltd, 3rd Floor, Narayana Health City, Bangalore, India
Correspondence:
[*]
Address for correspondence: Dr. Suvro Chatterjee, AU-KBC Research Centre, M.I.T. Campus of Anna University, Chromepet, Chennai-600044, India. Tels.: +91 44 2223 4885 × 48, +91 44 2223 2711 × 48; Fax: +91 44 2223 1034; E-mail: [email protected].
Abstract: Background:Fluid flow plays an important role in vascular development. However, the detailed mechanisms, particularly the link between flow and modulation of gene expression during vascular development, remain unexplored. In chick embryo, the key events of vascular development from initiation of heart beat to establishment of effective blood flow occur between the stages HH10 and HH13. Therefore, we propose a novel in vivo model to study the flow experienced by developing endothelium. Objective:Using this model, we aimed to capture the transcriptome dynamics of the pre- and post-flow conditions. Methods:RNA was isolated from extra embryonic area vasculosa (EE-AV) pooled from three chick embryos between HH10–HH13 and RNA sequencing was performed. Results:The whole transcriptome sequencing of chick identified up-regulation of some of the previously well-known mechanosensitive genes including NFR2, HAND1, CTGF and KDR. GO analyses of the up-regulated genes revealed enrichment of several biological processes including heart development, extracellular matrix organization, cell-matrix adhesion, cell migration, blood vessel development, patterning of blood vessels, collagen fibril organization. Genes encoding for gap junctions proteins which are involved in vascular remodeling and arterial–venous differentiation, and genes involved in cell–cell adhesion, and ECM interactions were significantly up-regulated. Validation of selected genes through semi quantitative PCR was performed. Conclusion:The study indicates that shear stress plays a major role in development. Through appropriate validation, this platform can serve as an in vivo model to study conditions of disturbed flow in pathology as well as normal flow during development.
