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Article type: Research Article
Authors: Blazewicz, Marek; ; | Hinder, Ian | Koppelman, David M.; | Brandt, Steven R.; | Ciznicki, Milosz | Kierzynka, Michal; | Löffler, Frank | Schnetter, Erik; ; | Tao, Jian
Affiliations: Applications Department, Poznań Supercomputing & Networking Center, Poznań, Poland | Poznań University of Technology, Poznań, Poland | Max-Planck-Institut für Gravitationsphysik, Albert-Einstein-Institut, Potsdam, Germany | Center for Computation & Technology, Louisiana State University, Baton Rouge, LA, USA | Division of Electrical & Computer Engineering, Louisiana State University, Baton Rouge, LA, USA | Division of Computer Science, Louisiana State University, Baton Rouge, LA, USA | Perimeter Institute for Theoretical Physics, Waterloo, ON, Canada | Department of Physics, University of Guelph, Guelph, ON, Canada
Note: [] Corresponding author: Marek Blazewicz. E-mail: [email protected]
Abstract: Starting from a high-level problem description in terms of partial differential equations using abstract tensor notation, the Chemora framework discretizes, optimizes, and generates complete high performance codes for a wide range of compute architectures. Chemora extends the capabilities of Cactus, facilitating the usage of large-scale CPU/GPU systems in an efficient manner for complex applications, without low-level code tuning. Chemora achieves parallelism through MPI and multi-threading, combining OpenMP and CUDA. Optimizations include high-level code transformations, efficient loop traversal strategies, dynamically selected data and instruction cache usage strategies, and JIT compilation of GPU code tailored to the problem characteristics. The discretization is based on higher-order finite differences on multi-block domains. Chemora's capabilities are demonstrated by simulations of black hole collisions. This problem provides an acid test of the framework, as the Einstein equations contain hundreds of variables and thousands of terms.
Keywords: Automatic parallelization, hybrid computing, GPU computing, parallel application frameworks, numerical methods
DOI: 10.3233/SPR-130360
Journal: Scientific Programming, vol. 21, no. 1-2, pp. 1-16, 2013
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