Affiliations: Department of Scalable Algorithms, Sandia National Laboratories, Albuquerque, NM, USA | Department of Biomedical Informatics and Department of Electrical and Computer Engineering, The Ohio State University, Columbus, OH, USA | Commissariat à l'Énergie Atomique et aux Énergies Alternatives, Direction des Applications Militaires, CEA, DAM, DIF, Arpajon, France
Note: [] Corresponding author: Karen D. Devine, Department of Scalable Algorithms, Sandia National Laboratories, Albuquerque, NM 87185-1318, USA. E-mail: [email protected].
Abstract: Partitioning and load balancing are important problems in scientific computing that can be modeled as combinatorial problems using graphs or hypergraphs. The Zoltan toolkit was developed primarily for partitioning and load balancing to support dynamic parallel applications, but has expanded to support other problems in combinatorial scientific computing, including matrix ordering and graph coloring. Zoltan is based on abstract user interfaces and uses callback functions. To simplify the use and integration of Zoltan with other matrix-based frameworks, such as the ones in Trilinos, we developed Isorropia as a Trilinos package, which supports most of Zoltan's features via a matrix-based interface. In addition to providing an easy-to-use matrix-based interface to Zoltan, Isorropia also serves as a platform for additional matrix algorithms. In this paper, we give an overview of the Zoltan and Isorropia toolkits, their design, capabilities and use. We also show how Zoltan and Isorropia enable large-scale, parallel scientific simulations, and describe current and future development in the next-generation package Zoltan2.
